dupRadar consists of a java counting tool and an R package. The java tool requires mapped, duplicate marked RNA-Seq reads as a bam file and a gene annotation file in GTF format and produces a table with per gene values such as read counts, percentage of duplicate reads, normalized read counts. The R package provides functions for plotting and analyzing the duplication rates dependent on the expression levels.
Últimos 5 Arquivos |
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| Nome | Tamanho | Data | Download count |
| Using the dupRadar package.html | 1.2 MB | 2015-11-14 01:13 | 2 |
| Tfbs_Rest.pdf | 94.2 MB | 2015-04-16 02:45 | 32 |
| Hist_Rest.pdf | 11.0 MB | 2015-04-16 02:39 | 12 |
| Repliseq.pdf | 6.1 MB | 2015-04-16 02:39 | 29 |
| Hist_H3k27me3b.pdf | 659.4 KB | 2015-04-16 02:39 | 42 |
Todos os Arquivos |
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| Using the dupRadar package.html | 1.2 MB | 2015-11-14 01:13 | 2 |
| Tfbs_Rest.pdf | 94.2 MB | 2015-04-16 02:45 | 32 |
| Hist_H3k27ac.pdf | 3.1 MB | 2015-04-16 02:39 | 19 |
| Hist_H3k27me3b.pdf | 659.4 KB | 2015-04-16 02:39 | 42 |
| Hist_H3k27me3.pdf | 2.6 MB | 2015-04-16 02:39 | 39 |
| Hist_H3k36me3b.pdf | 396.1 KB | 2015-04-16 02:39 | 43 |
| Hist_H3k36me3.pdf | 2.5 MB | 2015-04-16 02:39 | 22 |
| Hist_H3k79me2.pdf | 2.4 MB | 2015-04-16 02:39 | 12 |
| Hist_H3k9me1.pdf | 452.2 KB | 2015-04-16 02:39 | 16 |
| Hist_H3k9me3.pdf | 2.7 MB | 2015-04-16 02:39 | 31 |
| Hist_Input.pdf | 2.8 MB | 2015-04-16 02:39 | 24 |
| Hist_Rest.pdf | 11.0 MB | 2015-04-16 02:39 | 12 |
| Repliseq.pdf | 6.1 MB | 2015-04-16 02:39 | 29 |
| Ripseq.pdf | 1.1 MB | 2015-04-16 02:39 | 36 |
| Rnapet.pdf | 3.2 MB | 2015-04-16 02:39 | 22 |
| Tfbs_Ctcf.pdf | 7.7 MB | 2015-04-16 02:39 | 19 |
| Tfbs_Input.pdf | 10.8 MB | 2015-04-16 02:39 | 22 |
| Tfbs_Pol2.pdf | 7.0 MB | 2015-04-16 02:39 | 25 |
| Cage.pdf | 9.9 MB | 2015-04-16 02:39 | 17 |
| Chiapet.pdf | 985.5 KB | 2015-04-16 02:39 | 24 |
| Dgf.pdf | 3.6 MB | 2015-04-16 02:39 | 27 |
| Dna.pdf | 412.0 KB | 2015-04-16 02:39 | 26 |
| Dnase.pdf | 29.1 MB | 2015-04-16 02:39 | 25 |
| Faire.pdf | 4.5 MB | 2015-04-16 02:39 | 22 |
| Hist_Ctcf.pdf | 2.8 MB | 2015-04-16 02:39 | 22 |
| Hist_H3k4me1b.pdf | 140.3 KB | 2015-04-16 02:39 | 19 |
| Hist_H3k4me1.pdf | 3.3 MB | 2015-04-16 02:39 | 31 |
| Hist_H3k4me2.pdf | 2.6 MB | 2015-04-16 02:39 | 23 |
| Hist_H3k4me3b.pdf | 680.9 KB | 2015-04-16 02:39 | 21 |
| Hist_H3k4me3.pdf | 2.6 MB | 2015-04-16 02:39 | 38 |
| Hist_H3k9acb.pdf | 392.6 KB | 2015-04-16 02:39 | 28 |
| Hist_H3k9ac.pdf | 2.3 MB | 2015-04-16 02:39 | 23 |
| Hist_H3k27me3b.pdf | 124.4 KB | 2015-04-16 01:35 | 23 |
| Hist_H3k36me3b.pdf | 128.4 KB | 2015-04-16 01:35 | 21 |
| Hist_H3k36me3.pdf | 728.8 KB | 2015-04-16 01:35 | 23 |
| Hist_H3k79me2.pdf | 3.5 KB | 2015-04-16 01:35 | 28 |
| Hist_Input.pdf | 3.6 MB | 2015-04-16 01:35 | 36 |
| Hist_Rest.pdf | 367.6 KB | 2015-04-16 01:35 | 19 |
| Tfbs_Ctcf.pdf | 2.6 MB | 2015-04-16 01:35 | 18 |
| Tfbs_Input.pdf | 4.3 MB | 2015-04-16 01:35 | 26 |
| Tfbs_Pol2.pdf | 2.6 MB | 2015-04-16 01:35 | 24 |
| Tfbs_Rest.pdf | 13.7 MB | 2015-04-16 01:35 | 17 |
| Dgf.pdf | 1.5 MB | 2015-04-16 01:35 | 32 |
| Dnase.pdf | 8.7 MB | 2015-04-16 01:35 | 35 |
| Hist_H3k27ac.pdf | 2.7 MB | 2015-04-16 01:35 | 17 |
| Hist_H3k27me3.pdf | 693.3 KB | 2015-04-16 01:35 | 26 |
| Hist_H3k4me1.pdf | 3.3 MB | 2015-04-16 01:35 | 21 |
| Hist_H3k4me2.pdf | 3.5 KB | 2015-04-16 01:35 | 30 |
| Hist_H3k4me3.pdf | 4.1 MB | 2015-04-16 01:35 | 26 |
| Hist_H3k9ac.pdf | 3.5 KB | 2015-04-16 01:35 | 29 |
| Hist_H3k9me3.pdf | 938.4 KB | 2015-04-16 01:35 | 20 |
| rnaseq.hg19.pdf | 11.0 MB | 2015-04-16 01:34 | 13 |
| rnaseq.mm9.pdf | 9.4 MB | 2015-04-16 01:34 | 20 |
| classif.pdf | 289.3 KB | 2015-04-16 01:34 | 20 |
